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PeptiLine
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Contact
Contact-MBPDB@oregonstate.edu
Tools
PeptiLine
Data Transformation
Data Analysis
Heatmap Visualization
PepEx
Help
Data Analysis Dashboard
Data Transformation
1
Upload Merged Data File
Instructions:
Upload a merged data file from the
Data Transformation
module. Accepted formats: CSV or XLSX. The file must contain
Protein
,
Unique Peptide ID
, and
Avg_*
columns.
Click or drag CSV / XLSX
Download example file
·
Load example
2
Select Variables & Settings
Sample Groups
Hold Ctrl/Cmd to select multiple
Proteins
(sorted by abundance)
Hold Ctrl/Cmd to select multiple
Functions
Hold Ctrl/Cmd to select multiple
Plot Filter
No Filter
Selected Protein(s)
Selected Function(s)
Both
Functional vs Non-Functional
Visualization Settings:
Plot Type
Grouped Bar Plots
Stacked Bar Plots
Pie Charts
Corr. Scatter Plots
Plot Orientation
By Sample
By Protein
By Function
Value Type
Abundance
Peptide Count
Metric
Absolute
Relative
Correlation Type
Pearson
Spearman
Log₁₀ transform y-axis
Group Unselected Proteins or Functions
Appearance Settings:
X-Axis Label
Y-Axis Label
Legend Title
Plot Title
Color Scheme
HSV (Default)
Plotly
D3
G10
T10
Alphabet
Set1
Set2
Set3
Pastel1
Pastel2
Paired
Blues
Greens
Reds
Purples
Oranges
Greys
Steel Blue
Crimson
Sea Green
Dark Orange
Medium Purple
Teal
Coral
Gold
Slate Gray
Navy
Viridis
Cividis
Inferno
Spectral
RdBu
RdYlGn
Generate / Update Plot
Download Interactive Plot
Generating plot…
3
Plot Output
Upload a data file and configure settings to generate a plot.